Two issues: Capture continues during meridian flip - Incorrect filter selection for autofocus after flip.
For build 2023-11-17T09:48:40Z
While capturing in Capture Module Sequence Queue - During meridian flip noticed capture was still capturing image - Before it would abort on Meridian Flip.
After flip, I had selected L filter for alignment, after flip, align module used L filter as expected, however autofocus routine used L to focus, while Capture sequence was on Blue filter for capture, capture used L filter to capture a B fits.