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Rename prefix.sh.cmake to prefix.sh.in

David Faure requested to merge work/dfaure/in_files into kf5

This fixes QtCreator trying to parse it as cmake code: qtc.cmake.fileApiExtractor: WARNING: ?libCMakeProjectManager.so? Failed to parse: "/my/project/build/_deps/prefix/share/ECM/kde-modules/prefix.sh.cmake" "Parse error. Expected "(", got unquoted argument with text "PATH=@KDE_INSTALL_FULL_BINDIR@:$PATH".\n"

Same for clang-format.cmake

I always found .in clearer, this is a second reason to use that suffix.

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